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LINC00189 long intergenic non-protein coding RNA 189 [ Homo sapiens (human) ]

Gene ID: 193629, updated on 13-May-2022

Summary

Official Symbol
LINC00189provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 189provided by HGNC
Primary source
HGNC:HGNC:18461
See related
Ensembl:ENSG00000215533 AllianceGenome:HGNC:18461
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf109; NCRNA00189
Expression
Broad expression in placenta (RPKM 1.2), heart (RPKM 0.5) and 16 other tissues See more
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Genomic context

See LINC00189 in Genome Data Viewer
Location:
21q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (29193494..29288205)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (27559756..27654119)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (30565815..30660526)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene MAP3K7 C-terminal like Neighboring gene ribosomal protein L12 pseudogene 9 Neighboring gene uncharacterized LOC105372767 Neighboring gene small nucleolar RNA U3 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene 14 Neighboring gene uncharacterized LOC124905007 Neighboring gene uncharacterized LOC105369299 Neighboring gene BTB domain and CNC homolog 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study for biomarker identification of Rapamycin and Everolimus using a lymphoblastoid cell line system.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027072.2 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC065252
    Related
    ENST00000420364.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    29193494..29288205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791813.1 Reference GRCh38.p14 PATCHES

    Range
    287385..288152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    27559756..27654119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_138968.1: Suppressed sequence

    Description
    NM_138968.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.