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Rab19 RAB19, member RAS oncogene family [ Mus musculus (house mouse) ]

Gene ID: 19331, updated on 13-Mar-2020

Summary

Official Symbol
Rab19provided by MGI
Official Full Name
RAB19, member RAS oncogene familyprovided by MGI
Primary source
MGI:MGI:103292
See related
Ensembl:ENSMUSG00000029923
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in large intestine adult (RPKM 7.5), thymus adult (RPKM 3.6) and 11 other tissues See more
Orthologs

Genomic context

See Rab19 in Genome Data Viewer
Location:
6; 6 B1
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (39380709..39390666)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (39331427..39340379)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene predicted gene, 26008 Neighboring gene solute carrier family 37 (glycerol-3-phosphate transporter), member 3 Neighboring gene makorin, ring finger protein, 1 Neighboring gene predicted gene 10244 Neighboring gene predicted gene, 25402

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
GTP binding IEA
Inferred from Electronic Annotation
more info
 
GTPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Rab protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011226.2NP_035356.1  ras-related protein Rab-19

    See identical proteins and their annotated locations for NP_035356.1

    Status: VALIDATED

    Source sequence(s)
    BC032936, BQ562779
    Consensus CDS
    CCDS20021.1
    UniProtKB/Swiss-Prot
    P35294
    Related
    ENSMUSP00000031986.4, ENSMUST00000031986.4
    Conserved Domains (2) summary
    cd01864
    Location:15179
    Rab19; Rab GTPase family 19 (Rab19)
    smart00175
    Location:18182
    RAB; Rab subfamily of small GTPases

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p6 C57BL/6J

    Range
    39380709..39390666
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505760.2XP_006505823.1  ras-related protein Rab-19 isoform X1

    Conserved Domains (1) summary
    cl21455
    Location:42153
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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