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cct3 chaperonin containing TCP1, subunit 3 (gamma) [ Danio rerio (zebrafish) ]

Gene ID: 192327, updated on 1-Aug-2018

Summary

Official Symbol
cct3provided by ZNC
Official Full Name
chaperonin containing TCP1, subunit 3 (gamma)provided by ZNC
Primary source
ZFIN:ZDB-GENE-020419-5
See related
Ensembl:ENSDARG00000016173 Vega:OTTDARG00000021089
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
chunp6930; wu:fb13f04; wu:fb52a02; wu:fj48b06
Orthologs

Genomic context

See cct3 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (30408787..30421207, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (30450860..30463280, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene cortexin-2-like Neighboring gene transmembrane protein 79b Neighboring gene zgc:77086 Neighboring gene platelet endothelial aggregation receptor 1

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
embryonic eye morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of retinal cell programmed cell death IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein folding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
chaperonin-containing T-complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-complex protein 1 subunit gamma
Names
no tectal neuron
ntn
subunit 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173250.1NP_775357.1  T-complex protein 1 subunit gamma

    See identical proteins and their annotated locations for NP_775357.1

    Status: PROVISIONAL

    Source sequence(s)
    AF506209
    UniProtKB/TrEMBL
    Q8JHI7
    Related
    ENSDARP00000004738.7, OTTDARP00000047734, ENSDART00000003752.9, OTTDART00000026670
    Conserved Domains (2) summary
    cd03337
    Location:5524
    TCP1_gamma; TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins ...
    TIGR02344
    Location:5528
    chap_CCT_gamma; T-complex protein 1, gamma subunit

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    30408787..30421207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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