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cct2 chaperonin containing TCP1, subunit 2 (beta) [ Danio rerio (zebrafish) ]

Gene ID: 192326, updated on 11-Aug-2018

Summary

Official Symbol
cct2provided by ZNC
Official Full Name
chaperonin containing TCP1, subunit 2 (beta)provided by ZNC
Primary source
ZFIN:ZDB-GENE-020419-6
See related
Ensembl:ENSDARG00000104674 Vega:OTTDARG00000044112
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
fa26a01; fc58a11; CHUNP6883; wu:fa26a01; wu:fc58a11
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See cct2 in Genome Data Viewer
Location:
chromosome: 1, chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (78022546..78026284, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (76623606..76624991)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_008805374.1 (656..4394)

Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108183534 Neighboring gene zgc:194336 Neighboring gene nothepsin Neighboring gene gastrula zinc finger protein XlCGF49.1-like Neighboring gene uncharacterized LOC110437810

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

  • Homologs of the cct2 gene: The cct2 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, fruit fly, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs from Annotation Pipeline: 239 organisms have orthologs with human gene cct2

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
Kupffer's vesicle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
melanosome transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein folding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
T-complex protein 1 subunit beta
Names
subunit 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201455.1NP_958863.1  T-complex protein 1 subunit beta

    See identical proteins and their annotated locations for NP_958863.1

    Status: PROVISIONAL

    Source sequence(s)
    BC059558
    UniProtKB/TrEMBL
    Q6PBW6
    Related
    ENSDARP00000136096.1, OTTDARP00000050228, ENSDART00000168273.2, OTTDART00000064275
    Conserved Domains (2) summary
    PTZ00212
    Location:7530
    PTZ00212; T-complex protein 1 subunit beta; Provisional
    cd03336
    Location:11527
    TCP1_beta; TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL) ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007115.7 Reference GRCz11 Primary Assembly

    Range
    78022546..78026284 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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