Format

Send to:

Choose Destination

Ptgfrn prostaglandin F2 receptor negative regulator [ Mus musculus (house mouse) ]

Gene ID: 19221, updated on 20-Mar-2019

Summary

Official Symbol
Ptgfrnprovided by MGI
Official Full Name
prostaglandin F2 receptor negative regulatorprovided by MGI
Primary source
MGI:MGI:1277114
See related
Ensembl:ENSMUSG00000027864
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
FPRP; CD9P-1; Trim45; AU042434; 4833445A08Rik
Expression
Broad expression in lung adult (RPKM 30.6), bladder adult (RPKM 17.8) and 21 other tissues See more
Orthologs

Genomic context

See Ptgfrn in Genome Data Viewer
Location:
3; 3 F2.2
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (101040230..101110755, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (100844159..100914089, complement)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene transcription termination factor, RNA polymerase II Neighboring gene CD101 antigen Neighboring gene nuclear import 7 pseudogene Neighboring gene tumor protein, translationally-controlled, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
lipid droplet organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
myoblast fusion involved in skeletal muscle regeneration IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
prostaglandin F2 receptor negative regulator
Names
prostaglandin F2-alpha receptor regulatory protein
prostaglandin F2-alpha receptor-associated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011197.3NP_035327.2  prostaglandin F2 receptor negative regulator precursor

    See identical proteins and their annotated locations for NP_035327.2

    Status: VALIDATED

    Source sequence(s)
    AL645930, AL669872
    Consensus CDS
    CCDS17680.1
    UniProtKB/Swiss-Prot
    Q9WV91
    Related
    ENSMUSP00000099755.3, ENSMUST00000102694.3
    Conserved Domains (3) summary
    smart00406
    Location:39121
    IGv; Immunoglobulin V-Type
    smart00410
    Location:29140
    IG_like; Immunoglobulin like
    cl11960
    Location:283375
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    101040230..101110755 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017319503.1XP_017174992.1  prostaglandin F2 receptor negative regulator isoform X1

  2. XM_006501147.2XP_006501210.1  prostaglandin F2 receptor negative regulator isoform X2

    See identical proteins and their annotated locations for XP_006501210.1

    Conserved Domains (3) summary
    smart00406
    Location:27109
    IGv; Immunoglobulin V-Type
    smart00410
    Location:17128
    IG_like; Immunoglobulin like
    cl11960
    Location:271363
    Ig; Immunoglobulin domain

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187022.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    886672..956668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center