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Tmem47 transmembrane protein 47 [ Mus musculus (house mouse) ]

Gene ID: 192216, updated on 26-Sep-2022

Summary

Official Symbol
Tmem47provided by MGI
Official Full Name
transmembrane protein 47provided by MGI
Primary source
MGI:MGI:2177570
See related
Ensembl:ENSMUSG00000025666 AllianceGenome:MGI:2177570
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BCMP1; Tm4sf10; 3010015F07Rik
Summary
Predicted to be involved in cell-cell adhesion. Located in cell-cell junction. Is expressed in metanephros; musculature; ventral grey horn; and ventricular layer. Orthologous to human TMEM47 (transmembrane protein 47). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in frontal lobe adult (RPKM 15.1), cortex adult (RPKM 14.7) and 20 other tissues See more
Orthologs
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Genomic context

See Tmem47 in Genome Data Viewer
Location:
X; X B
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) X NC_000086.8 (80114250..80141481)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (81070644..81097875)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene non-POU-domain-containing, octamer binding protein pseudogene Neighboring gene anaphase promoting complex subunit 13 pseudogene Neighboring gene RAS guanyl releasing protein 4 pseudogene Neighboring gene eukaryotic translation initiation factor 4B pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
is_active_in cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transmembrane protein 47
Names
transmembrane 4 superfamily member 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138751.2NP_620090.1  transmembrane protein 47

    See identical proteins and their annotated locations for NP_620090.1

    Status: VALIDATED

    Source sequence(s)
    AL671873
    Consensus CDS
    CCDS30254.1
    UniProtKB/Swiss-Prot
    Q8C0H5, Q9JJG6
    UniProtKB/TrEMBL
    A0A6P5P3N5
    Related
    ENSMUSP00000026760.3, ENSMUST00000026760.3
    Conserved Domains (1) summary
    cl21598
    Location:21170
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    80114250..80141481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)