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Tmem47 transmembrane protein 47 [ Mus musculus (house mouse) ]

Gene ID: 192216, updated on 9-Sep-2018

Summary

Official Symbol
Tmem47provided by MGI
Official Full Name
transmembrane protein 47provided by MGI
Primary source
MGI:MGI:2177570
See related
Ensembl:ENSMUSG00000025666 Vega:OTTMUSG00000017841
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
BCMP1; Tm4sf10; AI115536; 3010015F07Rik
Expression
Broad expression in frontal lobe adult (RPKM 15.1), cortex adult (RPKM 14.7) and 20 other tissues See more
Orthologs

Genomic context

See Tmem47 in Genome Data Viewer
Location:
X; X B
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) X NC_000086.7 (81070644..81097875)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (78315983..78343214)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene non-POU-domain-containing, octamer binding protein pseudogene Neighboring gene anaphase promoting complex subunit 13 pseudogene Neighboring gene RAS guanyl releasing protein 4 pseudogene Neighboring gene RIKEN cDNA 4930595M18 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transmembrane protein 47
Names
transmembrane 4 superfamily member 10

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_138751.2NP_620090.1  transmembrane protein 47

    See identical proteins and their annotated locations for NP_620090.1

    Status: VALIDATED

    Source sequence(s)
    AL671873
    Consensus CDS
    CCDS30254.1
    UniProtKB/Swiss-Prot
    Q9JJG6
    Related
    ENSMUSP00000026760.2, OTTMUSP00000019424, ENSMUST00000026760.2, OTTMUST00000043184
    Conserved Domains (1) summary
    cl21598
    Location:22134
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000086.7 Reference GRCm38.p4 C57BL/6J

    Range
    81070644..81097875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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