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xtr-1 MX region of TRA-2 Related [ Caenorhabditis elegans ]

Gene ID: 192057, updated on 23-Nov-2023

Summary

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Gene symbol
xtr-1
Gene description
MX region of TRA-2 Related
Primary source
WormBase:WBGene00006965
Locus tag
CELE_F54F7.4
See related
AllianceGenome:WB:WBGene00006965
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in germ-line sex determination. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: X
Exon count:
2
Sequence:
Chromosome: X; NC_003284.9 (11852794..11853729)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene DUF19 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Ovule protein Neighboring gene Protein mes-1 Neighboring gene Elongin-C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003284.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Germ-line regulation of the Caenorhabditis elegans sex-determining gene tra-2. Kuwabara PE, et al. Dev Biol, 1998 Dec 1. PMID 9851857
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in germ-line sex determination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in hermaphrodite germ-line sex determination IEA
Inferred from Electronic Annotation
more info
  
involved_in hermaphrodite somatic sex determination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
MX region of TRA-2 Related
NP_001309443.1
  • Product from WormBase gene class xtr;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    11852794..11853729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001322634.2 → NP_001309443.1  MX region of TRA-2 Related [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20791
Nucleotide Protein
Heading Accession and Version

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