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nhr-85 Nuclear hormone receptor family member nhr-85 [ Caenorhabditis elegans ]

Gene ID: 191732, updated on 19-Oct-2019

Summary

Gene symbol
nhr-85
Gene description
Nuclear hormone receptor family member nhr-85
Primary source
WormBase:WBGene00003675
Locus tag
CELE_W05B5.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See nhr-85 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (13055201..13062122, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Calcium-transporting ATPase Neighboring gene hypothetical protein Neighboring gene G_PROTEIN_RECEP_F1_2 domain-containing protein Neighboring gene hypothetical protein Neighboring gene C-type lectin domain-containing protein

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
hormone-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
response to lipid IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
steroid hormone mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA polymerase II transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nuclear hormone receptor family member nhr-85
NP_001021667.1
  • Confirmed by transcript evidence
NP_001021668.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13055201..13062122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001026496.3NP_001021667.1  Nuclear hormone receptor family member nhr-85 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021667.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XUK7
    Conserved Domains (2) summary
    cd07166
    Location:110196
    NR_DBD_REV_ERB; DNA-binding domain of REV-ERB receptor-like is composed of two C4-type zinc fingers
    smart00430
    Location:261369
    HOLI; Ligand binding domain of hormone receptors
  2. NM_001026497.3NP_001021668.1  Nuclear hormone receptor family member nhr-85 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021668.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XUK7
    Conserved Domains (2) summary
    cl02596
    Location:118
    NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
    cl11397
    Location:83191
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
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