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Pou2af1 POU domain, class 2, associating factor 1 [ Mus musculus (house mouse) ]

Gene ID: 18985, updated on 3-Jun-2018
Official Symbol
Pou2af1provided by MGI
Official Full Name
POU domain, class 2, associating factor 1provided by MGI
Primary source
MGI:MGI:105086
See related
Ensembl:ENSMUSG00000032053 Vega:OTTMUSG00000063080
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Bob1; OCAB; BOB.1; Bob-1; OBF-1; OBF.1; OCA-B
Expression
Biased expression in spleen adult (RPKM 91.2), mammary gland adult (RPKM 18.2) and 6 other tissues See more
Orthologs
See Pou2af1 in Genome Data Viewer
Location:
9; 9 A5.3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (51213690..51240079)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (51021795..51048184)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene microRNA 34b Neighboring gene B cell translocation gene 4 Neighboring gene predicted gene, 32742 Neighboring gene uncharacterized LOC102635638 Neighboring gene RIKEN cDNA 1810046K07 gene Neighboring gene COLCA2 homolog Neighboring gene predicted gene, 32819

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II core promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
RNA polymerase II proximal promoter sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RNA polymerase II transcription factor complex ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
POU domain class 2-associating factor 1
Names
B-cell-specific coactivator OBF-1
OCT-binding factor 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011136.2NP_035266.1  POU domain class 2-associating factor 1

    See identical proteins and their annotated locations for NP_035266.1

    Status: PROVISIONAL

    Source sequence(s)
    AC160052
    Consensus CDS
    CCDS23176.1
    UniProtKB/Swiss-Prot
    Q64693
    UniProtKB/TrEMBL
    Q542H4
    Related
    ENSMUSP00000034554.7, OTTMUSP00000079464, ENSMUST00000034554.8, OTTMUST00000153541
    Conserved Domains (1) summary
    pfam09310
    Location:7255
    PD-C2-AF1; POU domain, class 2, associating factor 1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    51213690..51240079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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