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PHACADRAFT_167159 hypothetical protein [ Phanerochaete carnosa HHB-10118-sp ]

Gene ID: 18909371, updated on 14-Dec-2023

Summary

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Gene symbol
PHACADRAFT_167159
Gene description
hypothetical protein
Locus tag
PHACADRAFT_167159
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Phanerochaete carnosa HHB-10118-sp (strain: HHB-10118-sp)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Polyporales; Phanerochaetaceae; Phanerochaete
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Genomic context

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Location:
chromosome: Unknown
Exon count:
9

NW_006767640.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006767640.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize. Suzuki H, et al. BMC Genomics, 2012 Sep 2. PMID 22937793, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carboxy-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006767640.1 Reference assembly

    Range
    1130116..1132220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007401806.1 → XP_007401868.1  uncharacterized protein PHACADRAFT_167159 [Phanerochaete carnosa HHB-10118-sp]

    See identical proteins and their annotated locations for XP_007401868.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K5UJU8
    Conserved Domains (4) summary
    cd07038
    Location:22 → 154
    TPP_PYR_PDC_IPDC_like; Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins
    COG3961
    Location:19 → 533
    PDC1; TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase [Carbohydrate transport and metabolism, Coenzyme transport and metabolism, General function prediction only]
    cd02005
    Location:349 → 533
    TPP_PDC_IPDC; Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of ...
    pfam00205
    Location:186 → 302
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
Protein Accession Links
GenPept Link UniProtKB Link
EKM49816.1

Gene LinkOut

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Molecular Biology Databases