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Orm2 orosomucoid 2 [ Mus musculus (house mouse) ]

Gene ID: 18406, updated on 23-May-2018

Summary

Official Symbol
Orm2provided by MGI
Official Full Name
orosomucoid 2provided by MGI
Primary source
MGI:MGI:97444
See related
Ensembl:ENSMUSG00000061540 Vega:OTTMUSG00000000306
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Agp1; Orm-2
Expression
Biased expression in liver adult (RPKM 37.5), subcutaneous fat pad adult (RPKM 8.0) and 2 other tissues See more

Genomic context

See Orm2 in Genome Data Viewer
Location:
4 B3; 4 33.96 cM
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (63362449..63365877)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (63023483..63026911)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene orosomucoid 1 pseudogene Neighboring gene orosomucoid 3 Neighboring gene AT-hook transcription factor Neighboring gene AT-hook transcription factor, opposite strand Neighboring gene whirlin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by MGI

Process Evidence Code Pubs
acute-phase response IEA
Inferred from Electronic Annotation
more info
 
regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
alpha-1-acid glycoprotein 2
Names
AGP 2
OMD 2
bM340H1.5 (orosomucoid 2)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011016.2NP_035146.1  alpha-1-acid glycoprotein 2 precursor

    See identical proteins and their annotated locations for NP_035146.1

    Status: VALIDATED

    Source sequence(s)
    CB949119, M27009
    Consensus CDS
    CCDS18253.1
    UniProtKB/Swiss-Prot
    P07361
    Related
    ENSMUSP00000074810.3, OTTMUSP00000000350, ENSMUST00000075341.3, OTTMUST00000000782
    Conserved Domains (1) summary
    pfam00061
    Location:43181
    Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    63362449..63365877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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