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abcx-1 ABC transporter, eXtended [ Caenorhabditis elegans ]

Gene ID: 183860, updated on 18-Nov-2018

Summary

Gene symbol
abcx-1
Gene description
ABC transporter, eXtended
Primary source
WormBase:WBGene00006522
Locus tag
CELE_C56E6.1
Gene type
protein coding
RNA name
ABC transporter, eXtended
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See abcx-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_003280.10 (6532178..6535455)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ABC transporter, class H Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene UTP small subunit (SSU) processome component homolog Neighboring gene eLRR (extracellular Leucine-Rich Repeat) ONly Neighboring gene ncRNA

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
ATPase activity, coupled to transmembrane movement of substances IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ABC transporter, eXtended
NP_495321.3
  • Product from WormBase gene class abcx;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6532178..6535455
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062920.3NP_495321.3  ABC transporter, eXtended [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495321.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    D7SFK1
    Conserved Domains (1) summary
    cl21455
    Location:102302
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
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