Format

Send to:

Choose Destination

swd-2.1 Set1 WD40 repeat protein [ Caenorhabditis elegans ]

Gene ID: 183186, updated on 9-Sep-2018

Summary

Gene symbol
swd-2.1
Gene description
Set1 WD40 repeat protein
Primary source
WormBase:WBGene00016373
Locus tag
CELE_C33H5.6
Gene type
protein coding
RNA name
Set1 WD40 repeat protein
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See swd-2.1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (7776025..7777872)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene human HCF1 related Neighboring gene Set1 WD40 repeat protein Neighboring gene Rna (RNA) Polymerase II Associated Protein homolog Neighboring gene Exocyst complex component 5

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to histone methyltransferase activity (H3-K4 specific) IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
histone H3-K4 trimethylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Set1C/COMPASS complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Set1 WD40 repeat protein
NP_501281.2
  • Product from WormBase gene class swd;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7776025..7777872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068880.2NP_501281.2  Set1 WD40 repeat protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501281.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18404
    Conserved Domains (3) summary
    COG2319
    Location:3317
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:3367
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:28272
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Support Center