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Odf1 outer dense fiber of sperm tails 1 [ Mus musculus (house mouse) ]

Gene ID: 18285, updated on 1-Mar-2024

Summary

Official Symbol
Odf1provided by MGI
Official Full Name
outer dense fiber of sperm tails 1provided by MGI
Primary source
MGI:MGI:97424
See related
Ensembl:ENSMUSG00000061923 AllianceGenome:MGI:97424
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable protein domain specific binding activity. Predicted to act upstream of or within cell differentiation and spermatogenesis. Located in outer dense fiber. Is expressed in testis and thyroid gland. Orthologous to human ODF1 (outer dense fiber of sperm tails 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 1293.5) See more
Orthologs
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Genomic context

See Odf1 in Genome Data Viewer
Location:
15 B3.1; 15 15.14 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (38219447..38226979)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (38219203..38226735)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35081 Neighboring gene STARR-seq mESC enhancer starr_38438 Neighboring gene predicted gene, 35167 Neighboring gene ferritin light chain 1 pseudogene Neighboring gene SET pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in outer dense fiber IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in outer dense fiber IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in outer dense fiber IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
outer dense fiber protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008757.3NP_032783.2  outer dense fiber protein 1

    See identical proteins and their annotated locations for NP_032783.2

    Status: VALIDATED

    Source sequence(s)
    BC145758, BX632868, CJ042343
    Consensus CDS
    CCDS49596.1
    UniProtKB/Swiss-Prot
    Q61999
    UniProtKB/TrEMBL
    A6H656
    Related
    ENSMUSP00000080632.5, ENSMUST00000081966.5
    Conserved Domains (1) summary
    cd06482
    Location:102188
    ACD_HspB10; Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    38219447..38226979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)