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CTHT_0063660 putative mRNA splicing factor [ Thermochaetoides thermophila DSM 1495 ]

Gene ID: 18260404, updated on 27-Feb-2025
Gene symbol
CTHT_0063660
Gene description
putative mRNA splicing factor
Locus tag
CTHT_0063660
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Thermochaetoides thermophila DSM 1495 (strain: DSM 1495, variety: thermophilum, culture-collection: DSM:1495, type-material: type material of Chaetomium thermophilum)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Thermochaetoides
Orthologs
Fusarium oxysporum all
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See CTHT_0063660 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
5

NW_006383037.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein uL18 Neighboring gene uncharacterized protein Neighboring gene coenzyme A synthetase-like protein Neighboring gene putative VAMP- associated protein

Genomic Sequence:
NW_006383037.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile. Amlacher S, et al. Cell, 2011 Jul 22. PMID 21784248
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
putative mRNA splicing factor
XP_006696672.1
  • SMART: G_patch glycine rich nucleic binding domain
    SMART: HA2 Helicase associated domain (HA2) Add an annotation
    SMART: DEXDc DEAD-like helicases superfamily
    SMART: HELICc helicase superfamily c-terminal domain

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006383037.1 Reference assembly

    Range
    1626139..1631190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006696609.1 → XP_006696672.1  putative mRNA splicing factor [Thermochaetoides thermophila DSM 1495]

    See identical proteins and their annotated locations for XP_006696672.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G0SEG4
    Conserved Domains (8) summary
    smart00490
    Location:527 → 630
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:303 → 480
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:698 → 783
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:314 → 453
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam01585
    Location:1310 → 1347
    G-patch; G-patch domain
    pfam07717
    Location:818 → 923
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    pfam11917
    Location:140 → 313
    DUF3435; Protein of unknown function (DUF3435)
    cl17169
    Location:1391 → 1483
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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