U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CTHT_0057760 small conjugating protein ligase-like protein [ Thermochaetoides thermophila DSM 1495 ]

Gene ID: 18259814, updated on 6-Dec-2024
Gene symbol
CTHT_0057760
Gene description
small conjugating protein ligase-like protein
Locus tag
CTHT_0057760
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Thermochaetoides thermophila DSM 1495 (strain: DSM 1495, variety: thermophilum, culture-collection: DSM:1495, type-material: type material of Chaetomium thermophilum)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Chaetomiaceae; Thermochaetoides
Try the new Gene page
Try the new Transcripts and proteins table
See CTHT_0057760 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
7

NW_006383036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene SWM histone demethylase complex-like protein Neighboring gene calcium/calmodulin-dependent protein kinase-like protein Neighboring gene uncharacterized protein

Genomic Sequence:
NW_006383036.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile. Amlacher S, et al. Cell, 2011 Jul 22. PMID 21784248
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CORVET complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in fungal-type vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
small conjugating protein ligase-like protein
XP_006696096.1
  • SMART: UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006383036.1 Reference assembly

    Range
    2861268..2865042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006696033.1 → XP_006696096.1  small conjugating protein ligase-like protein [Thermochaetoides thermophila DSM 1495]

    See identical proteins and their annotated locations for XP_006696096.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G0SCM5
    Conserved Domains (2) summary
    cd00195
    Location:8 → 117
    UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    pfam00995
    Location:170 → 569
    Sec1; Sec1 family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases