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Nxph1 neurexophilin 1 [ Mus musculus (house mouse) ]

Gene ID: 18231, updated on 9-May-2024

Summary

Official Symbol
Nxph1provided by MGI
Official Full Name
neurexophilin 1provided by MGI
Primary source
MGI:MGI:107492
See related
Ensembl:ENSMUSG00000046178 AllianceGenome:MGI:107492
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C130005L03Rik
Summary
Enables signaling receptor binding activity. Predicted to be located in extracellular region. Is expressed in central nervous system and metanephros. Orthologous to human NXPH1 (neurexophilin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in CNS E18 (RPKM 2.9), frontal lobe adult (RPKM 2.6) and 5 other tissues See more
Orthologs
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Genomic context

See Nxph1 in Genome Data Viewer
Location:
6 A1; 6 4.38 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (8948154..9259863)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (8948614..9249619)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38765 Neighboring gene STARR-seq mESC enhancer starr_15127 Neighboring gene predicted gene, 35674 Neighboring gene STARR-seq mESC enhancer starr_15129 Neighboring gene STARR-seq mESC enhancer starr_15130 Neighboring gene STARR-seq mESC enhancer starr_15131 Neighboring gene STARR-seq mESC enhancer starr_15132 Neighboring gene STARR-seq mESC enhancer starr_15133 Neighboring gene STARR-seq mESC enhancer starr_15134 Neighboring gene STARR-seq mESC enhancer starr_15135 Neighboring gene STARR-seq mESC enhancer starr_15136 Neighboring gene STARR-seq mESC enhancer starr_15137 Neighboring gene nuclear encoded tRNA valine 5 (anticodon CAC) Neighboring gene actin, gamma, cytoplasmic 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (1)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008751.5NP_032777.3  neurexophilin-1 precursor

    See identical proteins and their annotated locations for NP_032777.3

    Status: PROVISIONAL

    Source sequence(s)
    BC145955
    Consensus CDS
    CCDS39426.1
    UniProtKB/Swiss-Prot
    A6H6P7, Q61200, Q8BHJ2, Q8BLP4
    UniProtKB/TrEMBL
    Q3TQN5
    Related
    ENSMUSP00000060926.4, ENSMUST00000060369.4
    Conserved Domains (1) summary
    pfam06312
    Location:66271
    Neurexophilin

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    8948154..9259863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505010.5XP_006505073.1  neurexophilin-1 isoform X2

    See identical proteins and their annotated locations for XP_006505073.1

    UniProtKB/Swiss-Prot
    A6H6P7, Q61200, Q8BHJ2, Q8BLP4
    UniProtKB/TrEMBL
    Q3TQN5
    Related
    ENSMUSP00000125274.2, ENSMUST00000160300.2
    Conserved Domains (1) summary
    pfam06312
    Location:66271
    Neurexophilin
  2. XM_036165922.1XP_036021815.1  neurexophilin-1 isoform X1

    UniProtKB/TrEMBL
    Q3TQN5
    Conserved Domains (1) summary
    pfam06312
    Location:68273
    Neurexophilin