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sma-9 SMAll [ Caenorhabditis elegans ]

Gene ID: 181271, updated on 6-Sep-2019

Summary

Gene symbol
sma-9
Gene description
SMAll
Primary source
WormBase:WBGene00004862
Locus tag
CELE_T05A10.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sma-9 in Genome Data Viewer
Location:
chromosome: X
Exon count:
27
Sequence:
Chromosome: X; NC_003284.9 (10769288..10782973)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene CLaudin-like in Caenorhabditis Neighboring gene TransThyretin-Related family domain Neighboring gene Venom-Allergen-like Protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
transcription coactivator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription corepressor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
SMAll
NP_001024877.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024878.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024879.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024880.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024882.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024883.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001024884.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001041286.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_001129935.1
  • Product from WormBase gene class sma;
    Partially confirmed by transcript evidence
NP_001129936.1
  • Product from WormBase gene class sma;
    Partially confirmed by transcript evidence
NP_001359674.1
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_741896.2
  • Product from WormBase gene class sma;
    Confirmed by transcript evidence
NP_741897.2
  • Product from WormBase gene class sma;
    Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    10769288..10782973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001136464.3NP_001129936.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129936.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B5U8M3
    Conserved Domains (3) summary
    sd00017
    Location:18151837
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:14721492
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:14841509
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001047821.4NP_001041286.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001041286.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q2L6U8
  3. NM_171772.4NP_741897.2  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741897.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MPY1
  4. NM_001136463.2NP_001129935.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129935.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B5U8M2
    Conserved Domains (3) summary
    sd00017
    Location:17231745
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:13801400
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:13921417
    zf-H2C2_2; Zinc-finger double domain
  5. NM_001029707.6NP_001024878.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024878.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM44
    Conserved Domains (3) summary
    sd00017
    Location:16841706
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:13411361
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:13531378
    zf-H2C2_2; Zinc-finger double domain
  6. NM_001029708.3NP_001024879.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024879.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM43
    Conserved Domains (3) summary
    sd00017
    Location:16841706
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:13411361
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:13531378
    zf-H2C2_2; Zinc-finger double domain
  7. NM_171771.6NP_741896.2  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741896.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22190
    Conserved Domains (3) summary
    sd00017
    Location:16161638
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:12731293
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:12851310
    zf-H2C2_2; Zinc-finger double domain
  8. NM_001029709.2NP_001024880.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024880.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM42
    Conserved Domains (3) summary
    sd00017
    Location:16841706
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:13411361
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:13531378
    zf-H2C2_2; Zinc-finger double domain
  9. NM_001373488.1NP_001359674.1  SMAll [Caenorhabditis elegans]

    Status: REVIEWED

  10. NM_001029712.2NP_001024883.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024883.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM46
    Conserved Domains (3) summary
    sd00017
    Location:16841706
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:13411361
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:13531378
    zf-H2C2_2; Zinc-finger double domain
  11. NM_001029713.3NP_001024884.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024884.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM47
    Conserved Domains (3) summary
    sd00019
    Location:13411361
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:13391361
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:13531378
    zf-H2C2_2; Zinc-finger double domain
  12. NM_001029706.5NP_001024877.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024877.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7JM48
    Conserved Domains (3) summary
    sd00017
    Location:12421264
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:899919
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:911936
    zf-H2C2_2; Zinc-finger double domain
  13. NM_001029711.4NP_001024882.1  SMAll [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024882.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED62
    Conserved Domains (3) summary
    sd00017
    Location:332354
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:242262
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:126
    zf-H2C2_2; Zinc-finger double domain
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