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vab-3 Paired box protein 6 homolog [ Caenorhabditis elegans ]

Gene ID: 181251, updated on 10-Aug-2021

Summary

Gene symbol
vab-3
Gene description
Paired box protein 6 homolog
Primary source
WormBase:WBGene00006870
Locus tag
CELE_F14F3.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See vab-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
14
Sequence:
Chromosome: X; NC_003284.9 (10499890..10519579)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene FTH domain-containing protein Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein Neighboring gene Lysophospholipid acyltransferase 7

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Paired box protein 6 homolog
NP_001024570.1
  • Confirmed by transcript evidence
NP_001024571.1
  • Confirmed by transcript evidence
NP_001024572.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    10499890..10519579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001029399.4NP_001024570.1  Paired box protein 6 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024570.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDS1
    Conserved Domains (3) summary
    smart00351
    Location:5129
    PAX; Paired Box domain
    COG5576
    Location:183293
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam00046
    Location:221274
    Homeobox; Homeobox domain
  2. NM_001029400.4NP_001024571.1  Paired box protein 6 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024571.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95ZV2
    Conserved Domains (1) summary
    pfam00046
    Location:3588
    Homeobox; Homeobox domain
  3. NM_001029401.6NP_001024572.1  Paired box protein 6 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024572.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EE71
    Conserved Domains (1) summary
    pfam00046
    Location:62115
    Homeobox; Homeobox domain
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