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ajm-1 Apical junction molecule [ Caenorhabditis elegans ]

Gene ID: 181148, updated on 10-Oct-2019

Summary

Gene symbol
ajm-1
Gene description
Apical junction molecule
Primary source
WormBase:WBGene00000100
Locus tag
CELE_C25A11.4
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See ajm-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
32
Sequence:
Chromosome: X; NC_003284.9 (9078945..9113613)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA Neighboring gene tRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene pseudo

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
cytoskeletal protein binding TAS
Traceable Author Statement
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell-cell junction organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
adherens junction IEA
Inferred from Electronic Annotation
more info
 
apical junction complex IDA
Inferred from Direct Assay
more info
PubMed 
apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 
apicolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cell-cell adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
cell-cell junction IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cilium IEA
Inferred from Electronic Annotation
more info
 
dendrite terminus IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Apical junction molecule
NP_001317733.1
  • Confirmed by transcript evidence
NP_001317734.1
  • Confirmed by transcript evidence
NP_001317735.1
  • Confirmed by transcript evidence
NP_001317736.1
  • Partially confirmed by transcript evidence
NP_001317887.1
  • Confirmed by transcript evidence
NP_001317888.1
  • Confirmed by transcript evidence
NP_001317889.1
  • Confirmed by transcript evidence
NP_001317890.1
  • Partially confirmed by transcript evidence
NP_001317891.1
  • Confirmed by transcript evidence
NP_001317897.1
  • Confirmed by transcript evidence
NP_001317898.1
  • Confirmed by transcript evidence
NP_001317899.1
  • Partially confirmed by transcript evidence
NP_001359810.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    9078945..9113613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001330904.2NP_001317887.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  2. NM_001330905.2NP_001317735.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  3. NM_001330907.2NP_001317733.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYC5
  4. NM_001330906.2NP_001317734.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95ZY7
  5. NM_001330908.2NP_001317889.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
    Conserved Domains (3) summary
    pfam01753
    Location:14451488
    zf-MYND; MYND finger
    pfam05672
    Location:426545
    MAP7; MAP7 (E-MAP-115) family
    cl26511
    Location:335932
    Neuromodulin_N; Gap junction protein N-terminal region
  6. NM_001330909.2NP_001317890.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  7. NM_001330910.2NP_001317891.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  8. NM_001373410.1NP_001359810.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

  9. NM_001330911.2NP_001317888.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  10. NM_001330912.2NP_001317897.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  11. NM_001330913.2NP_001317898.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  12. NM_001330914.2NP_001317899.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
  13. NM_001330915.2NP_001317736.1  Apical junction molecule [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0A1C3NSL9
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