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LOC18098256 protein SENSITIVE TO PROTON RHIZOTOXICITY 2 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18098256, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18098256
Gene description
protein SENSITIVE TO PROTON RHIZOTOXICITY 2
Locus tag
POPTR_004G217100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 4 NC_037288.2 (22280752..22282732)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 4 NC_037288.1 (22382118..22384247)

Chromosome 4 - NC_037288.2Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L9, chloroplastic Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene pheophorbide a oxygenase, chloroplastic Neighboring gene uncharacterized LOC18098258

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SENSITIVE TO PROTON RHIZOTOXICITY 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037288.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    22280752..22282732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006384906.3 → XP_006384968.1  protein SENSITIVE TO PROTON RHIZOTOXICITY 2

    See identical proteins and their annotated locations for XP_006384968.1

    UniProtKB/TrEMBL
    U5GGZ9
    Conserved Domains (1) summary
    sd00017
    Location:234 → 254
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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