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bar-1 Beta-catenin/armadillo-related protein 1 [ Caenorhabditis elegans ]

Gene ID: 180982, updated on 10-Oct-2019

Summary

Gene symbol
bar-1
Gene description
Beta-catenin/armadillo-related protein 1
Primary source
WormBase:WBGene00000238
Locus tag
CELE_C54D1.6
Gene type
protein coding
RNA name
Beta-catenin/armadillo-related protein 1
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See bar-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
17
Sequence:
Chromosome: X; NC_003284.9 (7166005..7170625, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene P-GlycoProtein related Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
RNA polymerase II sequence-specific DNA-binding transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
alpha-catenin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cadherin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cadherin binding IEA
Inferred from Electronic Annotation
more info
 
nuclear hormone receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein phosphatase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription coactivator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription coactivator activity IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Ras protein signal transduction IGI
Inferred from Genetic Interaction
more info
PubMed 
Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
canonical Wnt signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell adhesion TAS
Traceable Author Statement
more info
PubMed 
cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
cellular response to oxidative stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
dauer larval development IGI
Inferred from Genetic Interaction
more info
PubMed 
defense response to Gram-positive bacterium IMP
Inferred from Mutant Phenotype
more info
PubMed 
determination of adult lifespan IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment of mitotic spindle orientation IGI
Inferred from Genetic Interaction
more info
PubMed 
hermaphrodite genitalia development IMP
Inferred from Mutant Phenotype
more info
PubMed 
left/right axis specification IGI
Inferred from Genetic Interaction
more info
PubMed 
mating behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial unfolded protein response IMP
Inferred from Mutant Phenotype
more info
PubMed 
morphogenesis of an epithelium IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
oviposition IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of distal tip cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of vulval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of backward locomotion IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of vulval development IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of vulval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
catenin complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell junction IDA
Inferred from Direct Assay
more info
PubMed 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell-cell adherens junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell-cell adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Beta-catenin/armadillo-related protein 1
NP_509206.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    7166005..7170625 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076805.6NP_509206.1  Beta-catenin/armadillo-related protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_509206.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18825
    Conserved Domains (3) summary
    cd00020
    Location:296408
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    pfam04554
    Location:739796
    Extensin_2; Extensin-like region
    sd00043
    Location:294331
    ARM; armadillo repeat [structural motif]
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