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sax-3 Protein sax-3 [ Caenorhabditis elegans ]

Gene ID: 180637, updated on 5-Sep-2019

Summary

Gene symbol
sax-3
Gene description
Protein sax-3
Primary source
WormBase:WBGene00004729
Locus tag
CELE_ZK377.2
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sax-3 in Genome Data Viewer
Location:
chromosome: X
Exon count:
12
Sequence:
Chromosome: X; NC_003284.9 (3451945..3465925, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
axon guidance receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Roundabout signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
dorsal/ventral axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of sensory neuron axon guidance IGI
Inferred from Genetic Interaction
more info
PubMed 
sensory neuron axon guidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Protein sax-3
NP_001024990.1
  • Confirmed by transcript evidence
NP_741748.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    3451945..3465925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171652.5NP_741748.2  Protein sax-3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741748.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    G5EBF1
    Conserved Domains (5) summary
    cd05724
    Location:137223
    Ig2_Robo; Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    smart00060
    Location:755836
    FN3; Fibronectin type 3 domain
    cd00063
    Location:531624
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227313
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:30129
    Ig; Immunoglobulin domain
  2. NM_001029819.4NP_001024990.1  Protein sax-3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001024990.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    G5EBF1
    Conserved Domains (5) summary
    cd05724
    Location:137223
    Ig2_Robo; Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    smart00060
    Location:755836
    FN3; Fibronectin type 3 domain
    cd00063
    Location:531624
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227313
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:30129
    Ig; Immunoglobulin domain
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