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osm-5 hypothetical protein [ Caenorhabditis elegans ]

Gene ID: 180585, updated on 6-Jun-2018

Summary

Gene symbol
osm-5
Gene description
hypothetical protein
Primary source
WormBase:WBGene00003885
Locus tag
CELE_Y41G9A.1
Gene type
protein coding
RNA name
Uncharacterized protein
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See osm-5 in Genome Data Viewer
Location:
chromosome: X
Exon count:
15
Sequence:
Chromosome: X; NC_003284.9 (2984278..2991351)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene AMP-Activated protein Kinase Gamma subunit Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
kinesin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
cilium assembly IGI
Inferred from Genetic Interaction
more info
PubMed 
dauer entry IGI
Inferred from Genetic Interaction
more info
PubMed 
locomotory exploration behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
non-motile cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
non-motile cilium assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of chemotaxis IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to osmotic stress IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
centriole IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
ciliary base IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intraciliary transport particle B IDA
Inferred from Direct Assay
more info
PubMed 
neuron projection IDA
Inferred from Direct Assay
more info
PubMed 
non-motile cilium IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
non-motile cilium IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
hypothetical protein
NP_508511.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    2984278..2991351
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_076110.4NP_508511.1  Uncharacterized protein CELE_Y41G9A.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508511.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED37
    Conserved Domains (6) summary
    sd00006
    Location:473501
    TPR; TPR repeat [structural motif]
    pfam11207
    Location:524595
    DUF2989; Protein of unknown function (DUF2989)
    pfam13414
    Location:472532
    TPR_11; TPR repeat
    pfam13424
    Location:219289
    TPR_12; Tetratricopeptide repeat
    pfam13432
    Location:615676
    TPR_16; Tetratricopeptide repeat
    pfam14559
    Location:519584
    TPR_19; Tetratricopeptide repeat
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