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syg-1 Synaptogenesis protein syg-1 [ Caenorhabditis elegans ]

Gene ID: 180555, updated on 6-Jul-2021

Summary

Gene symbol
syg-1
Gene description
Synaptogenesis protein syg-1
Primary source
WormBase:WBGene00006365
Locus tag
CELE_K02E10.8
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See syg-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
16
Sequence:
Chromosome: X; NC_003284.9 (2509313..2515324, complement)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Protein kinase domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables cell adhesion molecule binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables cell adhesion molecule binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein-containing complex binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in branching morphogenesis of a nerve IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell-cell signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in collateral sprouting IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 
involved_in synapse assembly IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synapse organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synaptic target recognition IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in axon IDA
Inferred from Direct Assay
more info
PubMed 
located_in axon IEA
Inferred from Electronic Annotation
more info
 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
located_in synapse IDA
Inferred from Direct Assay
more info
PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Synaptogenesis protein syg-1
NP_001123159.1
  • Confirmed by transcript evidence
NP_001360786.1
  • Confirmed by transcript evidence
NP_508457.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    2509313..2515324 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129687.6NP_001123159.1  Synaptogenesis protein syg-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001123159.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B1Q236
    Conserved Domains (4) summary
    smart00410
    Location:450535
    IG_like; Immunoglobulin like
    pfam07679
    Location:24124
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:368438
    Ig_2; Immunoglobulin domain
    cl11960
    Location:440528
    Ig; Immunoglobulin domain
  2. NM_001373246.4NP_001360786.1  Synaptogenesis protein syg-1 [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (4) summary
    smart00409
    Location:450535
    IG; Immunoglobulin
    smart00410
    Location:283353
    IG_like; Immunoglobulin like
    pfam13927
    Location:361423
    Ig_3; Immunoglobulin domain
    cl11960
    Location:24124
    Ig; Immunoglobulin domain
  3. NM_076056.8NP_508457.3  Synaptogenesis protein syg-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_508457.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B1Q236
    Conserved Domains (4) summary
    smart00410
    Location:450535
    IG_like; Immunoglobulin like
    pfam07679
    Location:24124
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:368438
    Ig_2; Immunoglobulin domain
    cl11960
    Location:440528
    Ig; Immunoglobulin domain
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