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ncam-1 NCAM (neural cell adhesion molecule) homolog [ Caenorhabditis elegans ]

Gene ID: 180418, updated on 5-Sep-2019

Summary

Gene symbol
ncam-1
Gene description
NCAM (neural cell adhesion molecule) homolog
Primary source
WormBase:WBGene00017184
Locus tag
CELE_F02G3.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See ncam-1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
14
Sequence:
Chromosome: X; NC_003284.9 (692978..703036)

Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Ligand-Gated ion Channel Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Inward Rectifying K (potassium) channel family Neighboring gene hypothetical protein Neighboring gene Suppressor of LIneage defect

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
cell-cell adhesion mediator activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
dendrite self-avoidance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
homophilic cell adhesion via plasma membrane adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
axon IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
NCAM (neural cell adhesion molecule) homolog
NP_741707.3
  • Product from WormBase gene class ncam;
    Confirmed by transcript evidence
NP_741708.1
  • Product from WormBase gene class ncam;
    Confirmed by transcript evidence
NP_741709.1
  • Product from WormBase gene class ncam;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003284.9 Reference assembly

    Range
    692978..703036
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171615.5NP_741707.3  NCAM (neural cell adhesion molecule) homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741707.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q19128
    Conserved Domains (6) summary
    cd00096
    Location:42113
    Ig; Immunoglobulin domain
    smart00408
    Location:229293
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:37115
    IG; Immunoglobulin
    smart00410
    Location:229303
    IG_like; Immunoglobulin like
    cd00063
    Location:625674
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:133195
    Ig; Immunoglobulin domain
  2. NM_171616.4NP_741708.1  NCAM (neural cell adhesion molecule) homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741708.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T3E5
    Conserved Domains (6) summary
    cd00096
    Location:42113
    Ig; Immunoglobulin domain
    smart00408
    Location:229293
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:37115
    IG; Immunoglobulin
    smart00410
    Location:229303
    IG_like; Immunoglobulin like
    cd00063
    Location:625674
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:133195
    Ig; Immunoglobulin domain
  3. NM_171617.4NP_741709.1  NCAM (neural cell adhesion molecule) homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741709.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MQ86
    Conserved Domains (6) summary
    cd00096
    Location:69140
    Ig; Immunoglobulin domain
    smart00408
    Location:256320
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:64142
    IG; Immunoglobulin
    smart00410
    Location:256330
    IG_like; Immunoglobulin like
    cd00063
    Location:652701
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:160222
    Ig; Immunoglobulin domain
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