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prp-6 yeast PRP (splicing factor) related [ Caenorhabditis elegans ]

Gene ID: 180180, updated on 28-May-2020

Summary

Gene symbol
prp-6
Gene description
yeast PRP (splicing factor) related
Primary source
WormBase:WBGene00013343
Locus tag
CELE_Y59A8B.6
Gene type
protein coding
RNA name
yeast PRP (splicing factor) related
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See prp-6 in Genome Data Viewer
Location:
chromosome: V
Exon count:
13
Sequence:
Chromosome: V; NC_003283.11 (18022479..18042365)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class H Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene EB1 C-terminal domain-containing protein Neighboring gene microtubule End Binding Protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

  • Homologs of the prp-6 gene: The prp-6 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
  • Orthologs

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
RNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 
spliceosomal tri-snRNP complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
yeast PRP (splicing factor) related
NP_507525.1
  • Product from WormBase gene class prp;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    18022479..18042365
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_075124.7NP_507525.1  yeast PRP (splicing factor) related [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_507525.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GRZ2
    Conserved Domains (4) summary
    smart00386
    Location:470501
    HAT; HAT (Half-A-TPR) repeats
    sd00006
    Location:702730
    TPR; TPR repeat [structural motif]
    pfam06424
    Location:22182
    PRP1_N; PRP1 splicing factor, N-terminal
    pfam13414
    Location:737801
    TPR_11; TPR repeat
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