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sptl-3 Serine palmitoyltransferase 3 [ Caenorhabditis elegans ]

Gene ID: 179884, updated on 5-Sep-2019

Summary

Gene symbol
sptl-3
Gene description
Serine palmitoyltransferase 3
Primary source
WormBase:WBGene00011932
Locus tag
CELE_T22G5.5
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sptl-3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
11
Sequence:
Chromosome: V; NC_003283.11 (13893325..13896417)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Saposin B-type domain-containing protein Neighboring gene ncRNA Neighboring gene FABP domain-containing protein Neighboring gene CYtochrome P450 family Neighboring gene NRF domain-containing protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 
serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity, transferring acyl groups IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
sphingolipid metabolic process IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Serine palmitoyltransferase 3
NP_001256547.1
  • Partially confirmed by transcript evidence
NP_001256548.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13893325..13896417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001269618.2NP_001256547.1  Serine palmitoyltransferase 3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256547.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XVI6
    Conserved Domains (2) summary
    PLN02483
    Location:87514
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:123507
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
  2. NM_001269619.2NP_001256548.1  Serine palmitoyltransferase 3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256548.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XVI6
    Conserved Domains (2) summary
    PLN02483
    Location:78505
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:114498
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
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