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Ndn necdin [ Mus musculus (house mouse) ]

Gene ID: 17984, updated on 12-Aug-2019

Summary

Official Symbol
Ndnprovided by MGI
Official Full Name
necdinprovided by MGI
Primary source
MGI:MGI:97290
See related
Ensembl:ENSMUSG00000033585
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Peg6; AI528698
Orthologs

Genomic context

See Ndn in Genome Data Viewer
Location:
7 34.36 cM; 7 C
Exon count:
1
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (62348277..62349928)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (69493163..69494814)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene microRNA 344i Neighboring gene predicted gene, 42395 Neighboring gene predicted gene, 32061 Neighboring gene melanoma antigen, family L, 2 Neighboring gene makorin, ring finger protein, 3

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription activator activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II proximal promoter sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
gamma-tubulin binding IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
axon extension IMP
Inferred from Mutant Phenotype
more info
PubMed 
axonal fasciculation IMP
Inferred from Mutant Phenotype
more info
PubMed 
axonogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
central nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
genetic imprinting IMP
Inferred from Mutant Phenotype
more info
PubMed 
glial cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organismal homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of cell proliferation IEA
Inferred from Electronic Annotation
more info
 
neuron development IMP
Inferred from Mutant Phenotype
more info
PubMed 
neuron migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
neurotrophin TRK receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
post-embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of growth IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IGI
Inferred from Genetic Interaction
more info
PubMed 
respiratory gaseous exchange IMP
Inferred from Mutant Phenotype
more info
PubMed 
respiratory system process IMP
Inferred from Mutant Phenotype
more info
PubMed 
sensory perception of pain IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cell projection IDA
Inferred from Direct Assay
more info
PubMed 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010882.3NP_035012.2  necdin

    See identical proteins and their annotated locations for NP_035012.2

    Status: VALIDATED

    Source sequence(s)
    AK135444, AU080413, BY669518
    Consensus CDS
    CCDS21326.1
    UniProtKB/Swiss-Prot
    P25233
    Related
    ENSMUSP00000045369.4, ENSMUST00000038775.5
    Conserved Domains (1) summary
    pfam01454
    Location:109277
    MAGE; MAGE family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p6 C57BL/6J

    Range
    62348277..62349928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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