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hmp-1 Alpha-catenin-like protein hmp-1 [ Caenorhabditis elegans ]

Gene ID: 179624, updated on 6-Sep-2019

Summary

Gene symbol
hmp-1
Gene description
Alpha-catenin-like protein hmp-1
Primary source
WormBase:WBGene00001978
Locus tag
CELE_R13H4.4
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See hmp-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
9
Sequence:
Chromosome: V; NC_003283.11 (11845877..11852165)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene NePHronoPhthisis (human kidney disease) homolog Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene F-box domain-containing protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
actin filament binding IDA
Inferred from Direct Assay
more info
PubMed 
actin filament binding IEA
Inferred from Electronic Annotation
more info
 
beta-catenin binding IPI
Inferred from Physical Interaction
more info
PubMed 
cadherin binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell migration involved in gastrulation IGI
Inferred from Genetic Interaction
more info
PubMed 
cytoskeletal anchoring at plasma membrane IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryonic body morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
regulation of actin cytoskeleton organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
adherens junction IEA
Inferred from Electronic Annotation
more info
 
apical junction complex IDA
Inferred from Direct Assay
more info
PubMed 
catenin complex IDA
Inferred from Direct Assay
more info
PubMed 
cell IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell-cell adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Alpha-catenin-like protein hmp-1
NP_001122991.1
  • Confirmed by transcript evidence
NP_001256379.1
  • Confirmed by transcript evidence
NP_001263866.1
  • Partially confirmed by transcript evidence
NP_001263867.1
  • Confirmed by transcript evidence
NP_001360176.1
  • Partially confirmed by transcript evidence
NP_505985.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    11845877..11852165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001129519.3NP_001122991.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122991.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5JYX3
    Conserved Domains (1) summary
    pfam01044
    Location:77869
    Vinculin; Vinculin family
  2. NM_073584.5NP_505985.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_505985.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P90947
    Conserved Domains (1) summary
    pfam01044
    Location:77869
    Vinculin; Vinculin family
  3. NM_001373121.1NP_001360176.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    Status: REVIEWED

  4. NM_001276937.2NP_001263866.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263866.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    I7LFF2
    Conserved Domains (1) summary
    pfam01044
    Location:77848
    Vinculin; Vinculin family
  5. NM_001276938.2NP_001263867.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263867.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    I7J4D2
    Conserved Domains (1) summary
    pfam01044
    Location:77855
    Vinculin; Vinculin family
  6. NM_001269450.2NP_001256379.1  Alpha-catenin-like protein hmp-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256379.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F5GUG3
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