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LOC17893239 pentatricopeptide repeat-containing protein At3g18970 [ Capsella rubella ]

Gene ID: 17893239, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17893239
Gene description
pentatricopeptide repeat-containing protein At3g18970
Locus tag
CARUB_v10015722mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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See LOC17893239 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238921.1 (6676442..6677893, complement)

NW_006238921.1Genomic Context describing neighboring genes Neighboring gene protein JINGUBANG Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene B3 domain-containing protein At3g18960 Neighboring gene B3 domain-containing transcription factor VRN1 Neighboring gene protein DMR6-LIKE OXYGENASE 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238921 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pentatricopeptide repeat-containing protein At3g18970

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238921.1 Reference Caprub1_0

    Range
    6676442..6677893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006299486.2 → XP_006299548.1  pentatricopeptide repeat-containing protein At3g18970

    See identical proteins and their annotated locations for XP_006299548.1

    UniProtKB/TrEMBL
    R0GA56
    Conserved Domains (3) summary
    sd00004
    Location:289 → 316
    PPR; PPR repeat [structural motif]
    pfam13041
    Location:285 → 332
    PPR_2; PPR repeat family
    cl03252
    Location:317 → 349
    PPR; PPR repeat
Nucleotide Protein
Heading Accession and Version

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