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LOC17885159 caffeoylshikimate esterase [ Capsella rubella ]

Gene ID: 17885159, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17885159
Gene description
caffeoylshikimate esterase
Locus tag
CARUB_v10017533mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238919.1 (13456140..13459276, complement)

NW_006238919.1Genomic Context describing neighboring genes Neighboring gene UDP-glucuronic acid decarboxylase 2 Neighboring gene small nuclear ribonucleoprotein Sm D2 Neighboring gene 60S ribosomal protein L7a-2 Neighboring gene outer envelope pore protein 16-4, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238919 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caffeoylshikimate esterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238919.1 Reference Caprub1_0

    Range
    13456140..13459276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006291333.2 → XP_006291395.1  caffeoylshikimate esterase

    See identical proteins and their annotated locations for XP_006291395.1

    UniProtKB/TrEMBL
    R0HK91
    Conserved Domains (2) summary
    pfam12146
    Location:30 → 274
    Hydrolase_4; Serine aminopeptidase, S33
    cl21494
    Location:9 → 291
    Abhydrolase; alpha/beta hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases