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dpy-4 Col_cuticle_N domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 178414, updated on 6-Jul-2021

Summary

Gene symbol
dpy-4
Gene description
Col_cuticle_N domain-containing protein
Primary source
WormBase:WBGene00001066
Locus tag
CELE_Y41E3.2
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See dpy-4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (14985543..14986784, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene GB1/RHD3-type G domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables extracellular matrix structural constituent IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Col_cuticle_N domain-containing protein
NP_502808.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    14985543..14986784 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_070407.4NP_502808.1  Col_cuticle_N domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_502808.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O62432
    Conserved Domains (2) summary
    pfam01391
    Location:226269
    Collagen; Collagen triple helix repeat (20 copies)
    smart01088
    Location:1264
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
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