rps-11 Ribosomal Protein, Small subunit [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: rps-11
Gene description: Ribosomal Protein, Small subunit
Primary source: WormBase:WBGene00004480
Locus tag: CELE_F40F11.1
Gene type: protein coding
RNA name: Ribosomal Protein, Small subunit
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

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See rps-11 in Genome Data Viewer

Location:: chromosome: IV

Exon count:: 3

Sequence:: Chromosome: IV; NC_003282.8 (11602652..11603217)

Chromosome IV - NC_003282.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from BioSystems

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Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem (from WikiPathways)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem
Cytoplasmic Ribosomal Proteins
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Formation of a pool of free 40S subunits, organism-specific biosystem (from REACTOME)
Formation of a pool of free 40S subunits, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystem (from REACTOME)
Formation of the ternary complex, and subsequently, the 43S complex, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Major pathway of rRNA processing in the nucleolus and cytosol, organism-specific biosystem (from REACTOME)
Major pathway of rRNA processing in the nucleolus and cytosol, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Mitochondrial Unfolded-Protein Response (UPRmt), organism-specific biosystem (from WikiPathways)
Mitochondrial Unfolded-Protein Response (UPRmt), organism-specific biosystem"Mitochondria are required for numerous essential metabolic processes including the regulation of apoptosis; therefore, proper maintenance of the mitochondrial proteome is crucial. The protein-foldin...
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC), organism-specific biosystem (from REACTOME)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC), organism-specific biosystemcomputationally inferred pathway (not manually curated)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC), organism-specific biosystem (from REACTOME)
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC), organism-specific biosystemcomputationally inferred pathway (not manually curated)
Nonsense-Mediated Decay (NMD), organism-specific biosystem (from REACTOME)
Nonsense-Mediated Decay (NMD), organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosomal scanning and start codon recognition, organism-specific biosystem (from REACTOME)
Ribosomal scanning and start codon recognition, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
Ribosome, eukaryotes, conserved biosystem (from KEGG)
Ribosome, eukaryotes, conserved biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
rRNA processing, organism-specific biosystem (from REACTOME)
rRNA processing, organism-specific biosystemcomputationally inferred pathway (not manually curated)
rRNA processing in the nucleus and cytosol, organism-specific biosystem (from REACTOME)
rRNA processing in the nucleus and cytosol, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F40F11.1 (e-PCR)
- UniSTS:316790

Homology

Homologs of the rps-11 gene: The rps-11 gene is conserved in human, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
The Hierarchical Catalog of Orthologs

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info	PubMed
structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
determination of adult lifespan	IMP Inferred from Mutant Phenotype more info	PubMed
translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
cytosolic small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info	PubMed
intracellular	IEA Inferred from Electronic Annotation more info
ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Ribosomal Protein, Small subunit

NP_502186.1

Product from WormBase gene class rps;
Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.8 Reference assembly

Range

11602652..11603217

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_069785.5 → NP_502186.1 Ribosomal Protein, Small subunit [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_502186.1

Status: REVIEWED

UniProtKB/TrEMBL

Q20206

Conserved Domains (3) summary

PTZ00241
Location:1 → 155

PTZ00241; 40S ribosomal protein S11; Provisional

pfam00366
Location:72 → 141

Ribosomal_S17; Ribosomal protein S17

pfam16205
Location:4 → 70

Ribosomal_S17_N; Ribosomal_S17 N-terminal