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egl-38 Paired domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177876, updated on 5-Sep-2019

Summary

Gene symbol
egl-38
Gene description
Paired domain-containing protein
Primary source
WormBase:WBGene00001204
Locus tag
CELE_C04G2.7
Gene type
protein coding
RNA name
Paired domain-containing protein
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See egl-38 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
7
Sequence:
Chromosome: IV; NC_003282.8 (10106599..10110490, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Major sperm protein 10/36/56/76 Neighboring gene hypothetical protein Neighboring gene Probable exosome complex exonuclease RRP44 Neighboring gene SPerm CHromatin enriched Neighboring gene pseudo

Bibliography

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
RNA polymerase II regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
cell fate specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
nematode larval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
nematode male tail tip morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
uterus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
vulval development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Paired domain-containing protein
NP_501836.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    10106599..10110490 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069435.5NP_501836.1  Paired domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501836.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED14
    Conserved Domains (1) summary
    smart00351
    Location:29153
    PAX; Paired Box domain
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