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npp-1 Nup54 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177836, updated on 6-Jul-2021

Summary

Gene symbol
npp-1
Gene description
Nup54 domain-containing protein
Primary source
WormBase:WBGene00003787
Locus tag
CELE_K07F5.13
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See npp-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
10
Sequence:
Chromosome: IV; NC_003282.8 (9858488..9862119)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Sperm-Specific family, class Q Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene J domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables calmodulin binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nuclear envelope IDA
Inferred from Direct Assay
more info
PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 
part_of nuclear pore central transport channel IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nup54 domain-containing protein
NP_001379121.1
  • Partially confirmed by transcript evidence
NP_501770.1
  • Confirmed by transcript evidence
NP_501771.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9858488..9862119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069369.5NP_501770.1  Nup54 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501770.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U3B9
    Conserved Domains (3) summary
    pfam13634
    Location:2106
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:443574
    Nup54; Nucleoporin complex subunit 54
    pfam15967
    Location:83219
    Nucleoporin_FG2; Nucleoporin FG repeated region
  2. NM_069370.5NP_501771.1  Nup54 domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501771.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U3C1
    Conserved Domains (2) summary
    pfam13634
    Location:2122
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:353484
    Nup54; Nucleoporin complex subunit 54
  3. NM_001392375.1NP_001379121.1  Nup54 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (3) summary
    pfam13634
    Location:49132
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:416550
    Nup54; Nucleoporin complex subunit 54
    pfam15967
    Location:62262
    Nucleoporin_FG2; Nucleoporin FG repeated region
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