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nhr-34 Nuclear hormone receptor family member nhr-34 [ Caenorhabditis elegans ]

Gene ID: 177800, updated on 6-Jul-2021

Summary

Gene symbol
nhr-34
Gene description
Nuclear hormone receptor family member nhr-34
Primary source
WormBase:WBGene00003627
Locus tag
CELE_F58G6.5
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See nhr-34 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
13
Sequence:
Chromosome: IV; NC_003282.8 (9664365..9675672, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Copper transporter Neighboring gene Acetylcholine-gated chloride channel subunit acc-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in anatomical structure development IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in intracellular receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Nuclear hormone receptor family member nhr-34
NP_001023245.1
  • Confirmed by transcript evidence
NP_001129859.1
  • Confirmed by transcript evidence
NP_501716.2
  • Confirmed by transcript evidence
NP_741480.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    9664365..9675672 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171412.5NP_741480.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741480.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:1994
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:248419
    HOLI; Ligand binding domain of hormone receptors
  2. NM_069315.7NP_501716.2  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501716.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:133208
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:362533
    HOLI; Ligand binding domain of hormone receptors
  3. NM_001028074.5NP_001023245.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023245.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:151226
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:380551
    HOLI; Ligand binding domain of hormone receptors
  4. NM_001136387.4NP_001129859.1  Nuclear hormone receptor family member nhr-34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001129859.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q21006
    Conserved Domains (2) summary
    cd06960
    Location:83158
    NR_DBD_HNF4A; DNA-binding domain of heptocyte nuclear factor 4 (HNF4) is composed of two C4-type zinc fingers
    smart00430
    Location:312483
    HOLI; Ligand binding domain of hormone receptors
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