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syx-4 Putative syntaxin-4 [ Caenorhabditis elegans ]

Gene ID: 177647, updated on 5-Sep-2019

Summary

Gene symbol
syx-4
Gene description
Putative syntaxin-4
Primary source
WormBase:WBGene00006374
Locus tag
CELE_T01B11.3
Gene type
protein coding
RNA name
Putative syntaxin-4
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See syx-4 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
5
Sequence:
Chromosome: IV; NC_003282.8 (8457280..8458933)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Ethanolamine-phosphate phospho-lyase homolog 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Adenine Nucleotide Translocator Neighboring gene MFS domain-containing protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
SNAP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SNARE binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cortical granule exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 
positive regulation of cytokinesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle docking ISS
Inferred from Sequence or Structural Similarity
more info
 
synaptic vesicle fusion to presynaptic active zone membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle docking IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle fusion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
SNARE complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cleavage furrow IDA
Inferred from Direct Assay
more info
PubMed 
cortical granule IDA
Inferred from Direct Assay
more info
PubMed 
endomembrane system IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
presynaptic active zone membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
presynaptic membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synaptic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Putative syntaxin-4
NP_501439.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8457280..8458933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_069038.4NP_501439.2  Putative syntaxin-4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501439.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P91409
    Conserved Domains (3) summary
    smart00503
    Location:31142
    SynN; Syntaxin N-terminal domain
    cd15848
    Location:194254
    SNARE_syntaxin1-like; SNARE motif of syntaxin 1 and related proteins
    pfam00804
    Location:33228
    Syntaxin; Syntaxin
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