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sax-7 Fibronectin type-III domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177602, updated on 5-Sep-2019

Summary

Gene symbol
sax-7
Gene description
Fibronectin type-III domain-containing protein
Primary source
WormBase:WBGene00004732
Locus tag
CELE_C18F3.2
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See sax-7 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
19
Sequence:
Chromosome: IV; NC_003282.8 (8062669..8084087)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Neuronal SYmmetry Neighboring gene ncRNA Neighboring gene hypothetical protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
ankyrin binding IPI
Inferred from Physical Interaction
more info
PubMed 
cell adhesion molecule binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
apical constriction involved in gastrulation IGI
Inferred from Genetic Interaction
more info
PubMed 
cell migration involved in gastrulation IGI
Inferred from Genetic Interaction
more info
PubMed 
dendrite morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
dendrite self-avoidance IGI
Inferred from Genetic Interaction
more info
PubMed 
dendrite self-avoidance IMP
Inferred from Mutant Phenotype
more info
PubMed 
embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
establishment of mitotic spindle orientation IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of dendrite morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of dendrite morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of dendrite extension IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of dendrite extension IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of dendrite morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
axolemma IDA
Inferred from Direct Assay
more info
PubMed 
cell-cell adherens junction IDA
Inferred from Direct Assay
more info
PubMed 
dendrite membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
lateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
sarcomere IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sarcomere IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Fibronectin type-III domain-containing protein
NP_001033394.1
  • Confirmed by transcript evidence
NP_001033395.1
  • Confirmed by transcript evidence
NP_001033396.1
  • Confirmed by transcript evidence
NP_001033397.1
  • Confirmed by transcript evidence
NP_001294161.1
  • Confirmed by transcript evidence
NP_001294162.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    8062669..8084087
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001038307.4NP_001033396.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001033396.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q53U87
    Conserved Domains (7) summary
    cd00096
    Location:557628
    Ig; Immunoglobulin domain
    smart00410
    Location:353437
    IG_like; Immunoglobulin like
    cd00063
    Location:755857
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:537630
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:866980
    fn3; Fibronectin type III domain
    pfam13882
    Location:12381314
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:64136
    Ig; Immunoglobulin domain
  2. NM_001038306.4NP_001033395.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001033395.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q4PIU9
    Conserved Domains (7) summary
    cd00096
    Location:557628
    Ig; Immunoglobulin domain
    smart00410
    Location:353437
    IG_like; Immunoglobulin like
    cd00063
    Location:755857
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:537630
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:866980
    fn3; Fibronectin type III domain
    pfam13882
    Location:12381311
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:64136
    Ig; Immunoglobulin domain
  3. NM_001038308.3NP_001033397.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001033397.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q53U86
    Conserved Domains (7) summary
    cd00096
    Location:373444
    Ig; Immunoglobulin domain
    smart00410
    Location:169253
    IG_like; Immunoglobulin like
    cd00063
    Location:571673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:353446
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:682796
    fn3; Fibronectin type III domain
    pfam13882
    Location:10541130
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:177256
    Ig; Immunoglobulin domain
  4. NM_001038305.2NP_001033394.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001033394.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18100
    Conserved Domains (7) summary
    cd00096
    Location:373444
    Ig; Immunoglobulin domain
    smart00410
    Location:169253
    IG_like; Immunoglobulin like
    cd00063
    Location:571673
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:353446
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:682796
    fn3; Fibronectin type III domain
    pfam13882
    Location:10541127
    Bravo_FIGEY; Bravo-like intracellular region
    cl11960
    Location:177256
    Ig; Immunoglobulin domain
  5. NM_001307233.2NP_001294162.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294162.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RTH3
    Conserved Domains (2) summary
    cd00063
    Location:25102
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13882
    Location:159232
    Bravo_FIGEY; Bravo-like intracellular region
  6. NM_001307232.2NP_001294161.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294161.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RRX6
    Conserved Domains (2) summary
    cd00063
    Location:25102
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam13882
    Location:159235
    Bravo_FIGEY; Bravo-like intracellular region
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