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cla-1 Protein clarinet [ Caenorhabditis elegans ]

Gene ID: 177539, updated on 5-Sep-2019

Summary

Gene symbol
cla-1
Gene description
Protein clarinet
Primary source
WormBase:WBGene00018468
Locus tag
CELE_F45E4.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See cla-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
41
Sequence:
Chromosome: IV; NC_003282.8 (7588931..7628234)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Chromo domain-containing protein Neighboring gene NUC153 domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene Pur alpha Like Protein

General gene information

Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
maintenance of presynaptic active zone structure IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle clustering IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptic vesicle exocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
axon IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
presynaptic active zone IDA
Inferred from Direct Assay
more info
PubMed 
synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Protein clarinet
NP_001294143.1
  • Partially confirmed by transcript evidence
NP_001294144.1
  • Partially confirmed by transcript evidence
NP_001294148.2
  • Partially confirmed by transcript evidence
NP_001294149.2
  • Partially confirmed by transcript evidence
NP_501237.1
  • Confirmed by transcript evidence
NP_501238.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    7588931..7628234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001307219.3NP_001294148.2  LOW QUALITY PROTEIN: Protein clarinet [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RTA4
    Conserved Domains (3) summary
    cd04031
    Location:87148838
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    cd00992
    Location:85688658
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl23849
    Location:728927
    TrbI; Bacterial conjugation TrbI-like protein
  2. NM_001307220.3NP_001294149.2  LOW QUALITY PROTEIN: Protein clarinet [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6SB91
  3. NM_001307215.2NP_001294144.1  Protein clarinet [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294144.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6SB84
    Conserved Domains (4) summary
    pfam09528
    Location:5861063
    Ehrlichia_rpt; Ehrlichia tandem repeat (Ehrlichia_rpt)
    cd04031
    Location:24342558
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    PRK01741
    Location:392565
    PRK01741; cell division protein ZipA; Provisional
    cd00992
    Location:22882378
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
  4. NM_001307214.2NP_001294143.1  Protein clarinet [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001294143.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    W6RT96
  5. NM_068836.4NP_501237.1  Protein clarinet [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501237.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYL0
    Conserved Domains (2) summary
    cd00992
    Location:877967
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl14603
    Location:10231147
    C2; C2 domain
  6. NM_068837.4NP_501238.1  Protein clarinet [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_501238.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9BI65
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