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lag-1 Suppressor of hairless protein homolog [ Caenorhabditis elegans ]

Gene ID: 177373, updated on 4-Sep-2021

Summary

Gene symbol
lag-1
Gene description
Suppressor of hairless protein homolog
Primary source
WormBase:WBGene00002245
Locus tag
CELE_K08B4.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See lag-1 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
12
Sequence:
Chromosome: IV; NC_003282.8 (6095407..6110655)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cystatin cpi-1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Uncharacterized protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in chromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Suppressor of hairless protein homolog
NP_001023278.1
  • Confirmed by transcript evidence
NP_001293740.1
  • Confirmed by transcript evidence
NP_001368385.1
  • Confirmed by transcript evidence
NP_741410.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    6095407..6110655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_171350.7NP_741410.1  Suppressor of hairless protein homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741410.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDU7
    Conserved Domains (3) summary
    pfam09270
    Location:384536
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:217379
    LAG1-DNAbind; LAG1, DNA binding
    cl15674
    Location:558660
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
  2. NM_001028107.5NP_001023278.1  Suppressor of hairless protein homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023278.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MXE7
    Conserved Domains (3) summary
    pfam09270
    Location:382534
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:215377
    LAG1-DNAbind; LAG1, DNA binding
    cl15674
    Location:556658
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
  3. NM_001306811.4NP_001293740.1  Suppressor of hairless protein homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293740.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CLJ5
    Conserved Domains (3) summary
    pfam09270
    Location:528653
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:334492
    LAG1-DNAbind; LAG1, DNA binding
    cl15674
    Location:675777
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
  4. NM_001380259.1NP_001368385.1  Suppressor of hairless protein homolog [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (3) summary
    pfam09270
    Location:365490
    BTD; Beta-trefoil DNA-binding domain
    pfam09271
    Location:171329
    LAG1-DNAbind; LAG1, DNA binding
    cl15674
    Location:512614
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
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