U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

col-34 Cuticle collagen 34 [ Caenorhabditis elegans ]

Gene ID: 177188, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
col-34
Official Full Name
Cuticle collagen 34
Primary source
WormBase:WBGene00000611
Locus tag
CELE_F36A4.10
See related
AllianceGenome:WB:WBGene00000611
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See col-34 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
3
Sequence:
Chromosome: IV; NC_003282.8 (4243545..4244610, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Transthyretin-like family protein Neighboring gene DNA-directed RNA polymerase II subunit RPB1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Expression of ram-5 in the structural cell is required for sensory ray morphogenesis in Caenorhabditis elegans male tail. Yu RY, et al. EMBO J, 2000 Jul 17. PMID 10899109, Free PMC Article
  2. Mutations with sensory ray defect unmask cuticular glycoprotein antigens in Caenorhabditis elegans male tail. Ko FC, et al. Dev Growth Differ, 2000 Feb. PMID 10831045
  3. dpy-13: a nematode collagen gene that affects body shape. von Mende N, et al. Cell, 1988 Nov 18. PMID 2846184
  4. Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products. Bird DM. Gene, 1992 Oct 21. PMID 1398138
  5. The cuticle of the nematode Caenorhabditis elegans: a complex collagen structure. Johnstone IL. Bioessays, 1994 Mar. PMID 8166670

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of cuticle NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen and cuticulin-based cuticle development NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region NAS
Non-traceable Author Statement
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Cuticle collagen 34
NP_500520.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4243545..4244610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_068119.6 → NP_500520.1  Cuticle collagen 34 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500520.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34687, Q20087
    Conserved Domains (1) summary
    smart01088
    Location:12 → 64
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34687.2

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools