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hlh-30 BHLH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 177157, updated on 10-Oct-2019

Summary

Gene symbol
hlh-30
Gene description
BHLH domain-containing protein
Primary source
WormBase:WBGene00020930
Locus tag
CELE_W02C12.3
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See hlh-30 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
13
Sequence:
Chromosome: IV; NC_003282.8 (4014787..4034951, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene C-type LECtin Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene hypothetical protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA-binding transcription factor activity, RNA polymerase II-specific ISS
Inferred from Sequence or Structural Similarity
more info
 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
colocalizes_with nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
BHLH domain-containing protein
NP_001023411.1
  • Confirmed by transcript evidence
NP_001023412.1
  • Confirmed by transcript evidence
NP_001023413.1
  • Confirmed by transcript evidence
NP_001023414.1
  • Confirmed by transcript evidence
NP_001023416.1
  • Confirmed by transcript evidence
NP_001350990.1
  • Partially confirmed by transcript evidence
NP_001350991.1
  • Partially confirmed by transcript evidence
NP_001360026.1
  • Confirmed by transcript evidence
NP_500461.1
  • Confirmed by transcript evidence
NP_500462.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    4014787..4034951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001364042.2NP_001350990.1  BHLH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    cd00083
    Location:210270
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  2. NM_001364041.2NP_001350991.1  BHLH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    cd00083
    Location:185245
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  3. NM_068060.4NP_500461.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500461.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZZ1
    Conserved Domains (1) summary
    cd00083
    Location:236296
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  4. NM_001028242.4NP_001023413.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023413.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86MJ3
    Conserved Domains (1) summary
    cd00083
    Location:176236
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  5. NM_001028241.3NP_001023412.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023412.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86MJ4
    Conserved Domains (1) summary
    cd00083
    Location:201261
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  6. NM_001028243.2NP_001023414.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023414.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZZ3
    Conserved Domains (1) summary
    cd00083
    Location:210270
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  7. NM_001028245.4NP_001023416.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023416.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5TYL0
    Conserved Domains (1) summary
    cd00083
    Location:98158
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  8. NM_001028240.4NP_001023411.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023411.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZZ2
    Conserved Domains (1) summary
    cd00083
    Location:261321
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  9. NM_068061.4NP_500462.1  BHLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_500462.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZZ0
    Conserved Domains (1) summary
    cd00083
    Location:235295
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
  10. NM_001372787.1NP_001360026.1  BHLH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

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