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pat-6 Paralyzed arrest at two-fold protein 6 [ Caenorhabditis elegans ]

Gene ID: 176848, updated on 2-Oct-2018

Summary

Gene symbol
pat-6
Gene description
Paralyzed arrest at two-fold protein 6
Primary source
WormBase:WBGene00003932
Locus tag
CELE_T21D12.4
Gene type
protein coding
RNA name
Paralyzed arrest at two-fold protein 6
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See pat-6 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
7
Sequence:
Chromosome: IV; NC_003282.8 (262009..264224, complement)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene DumPY: shorter than wild-type Neighboring gene PQBP1 (polyglutamine tract-binding neurodegeneration protein) homolog Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
actin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
actin cytoskeleton reorganization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
actin cytoskeleton reorganization IEA
Inferred from Electronic Annotation
more info
 
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
cell projection assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
establishment or maintenance of cell polarity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle cell cellular homeostasis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of locomotion IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of sarcomere organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
striated muscle cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
substrate adhesion-dependent cell spreading IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
M band IDA
Inferred from Direct Assay
more info
PubMed 
M band IEA
Inferred from Electronic Annotation
more info
 
actin cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
axon IEA
Inferred from Electronic Annotation
more info
 
basal plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
focal adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
perikaryon IEA
Inferred from Electronic Annotation
more info
 
striated muscle dense body IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
Paralyzed arrest at two-fold protein 6
NP_499891.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    262009..264224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_067490.5NP_499891.1  Paralyzed arrest at two-fold protein 6 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_499891.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O16785
    Conserved Domains (1) summary
    pfam00307
    Location:103201
    CH; Calponin homology (CH) domain
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