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trp-1 ANK_REP_REGION domain-containing protein;Transient-receptor-potential-like protein [ Caenorhabditis elegans ]

Gene ID: 176202, updated on 5-Sep-2019

Summary

Gene symbol
trp-1
Gene description
ANK_REP_REGION domain-containing protein;Transient-receptor-potential-like protein
Primary source
WormBase:WBGene00006614
Locus tag
CELE_ZC21.2
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See trp-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
16
Sequence:
Chromosome: III; NC_003281.10 (8535131..8542748)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
calcium channel activity IEA
Inferred from Electronic Annotation
more info
 
inositol 1,4,5 trisphosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
store-operated calcium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
calcium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
manganese ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cytosolic calcium ion concentration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
single fertilization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cation channel complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ANK_REP_REGION domain-containing protein;Transient-receptor-potential-like protein
NP_001040889.1
  • Confirmed by transcript evidence
NP_001040890.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    8535131..8542748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001047424.3NP_001040889.1  Transient-receptor-potential-like protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040889.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34586
    Conserved Domains (4) summary
    cd00204
    Location:56184
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:34805
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:198257
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:85115
    ANK; ANK repeat [structural motif]
  2. NM_001047425.2NP_001040890.1  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001040890.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q27GV1
    Conserved Domains (4) summary
    cd00204
    Location:76204
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    TIGR00870
    Location:72825
    trp; transient-receptor-potential calcium channel protein
    pfam08344
    Location:218277
    TRP_2; Transient receptor ion channel II
    sd00045
    Location:105135
    ANK; ANK repeat [structural motif]
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