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cup-4 Acetylcholine receptor-like protein cup-4 [ Caenorhabditis elegans ]

Gene ID: 176104, updated on 10-Apr-2019

Summary

Gene symbol
cup-4
Gene description
Acetylcholine receptor-like protein cup-4
Primary source
WormBase:WBGene00000845
Locus tag
CELE_C02C2.3
Gene type
protein coding
RNA name
Acetylcholine receptor-like protein cup-4
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See cup-4 in Genome Data Viewer
Location:
chromosome: III
Exon count:
7
Sequence:
Chromosome: III; NC_003281.10 (7866569..7868693)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized transporter slc-17.3 Neighboring gene Probable small nuclear ribonucleoprotein F Neighboring gene Putative tyrosinase-like protein tyr-1 Neighboring gene Iodotyrosine dehalogenase 1 homolog

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
acetylcholine receptor activity NAS
Non-traceable Author Statement
more info
PubMed 
contributes_to extracellular ligand-gated ion channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular ligand-gated ion channel activity IEA
Inferred from Electronic Annotation
more info
 
ion channel activity IEA
Inferred from Electronic Annotation
more info
 
ion channel activity TAS
Traceable Author Statement
more info
PubMed 
transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
determination of adult lifespan IGI
Inferred from Genetic Interaction
more info
PubMed 
determination of adult lifespan IMP
Inferred from Mutant Phenotype
more info
PubMed 
endocytosis IEA
Inferred from Electronic Annotation
more info
 
endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
ion transport IEA
Inferred from Electronic Annotation
more info
 
nervous system process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of oviposition IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of membrane potential IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to caloric restriction IDA
Inferred from Direct Assay
more info
PubMed 
response to caloric restriction IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to paraquat IGI
Inferred from Genetic Interaction
more info
PubMed 
response to paraquat IMP
Inferred from Mutant Phenotype
more info
PubMed 
signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle membrane IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
synapse IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
Acetylcholine receptor-like protein cup-4
NP_498710.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7866569..7868693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066309.5NP_498710.2  Acetylcholine receptor-like protein cup-4 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498710.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34271
    Conserved Domains (1) summary
    pfam02931
    Location:48222
    Neur_chan_LBD; Neurotransmitter-gated ion-channel ligand binding domain
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