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egl-5 Homeobox protein egl-5 [ Caenorhabditis elegans ]

Gene ID: 176093, updated on 19-Oct-2019

Summary

Gene symbol
egl-5
Gene description
Homeobox protein egl-5
Primary source
WormBase:WBGene00001174
Locus tag
CELE_C08C3.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See egl-5 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (7814374..7817140)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Eukaryotic translation initiation factor 3 subunit A

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
RNA polymerase II distal enhancer sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
anterior/posterior pattern specification IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
nematode male tail tip morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of cell adhesion IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Homeobox protein egl-5
NP_001021166.1
  • Confirmed by transcript evidence
NP_001021167.1
  • Confirmed by transcript evidence
NP_498697.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7814374..7817140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001025996.2NP_001021167.1  Homeobox protein egl-5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021167.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17486
    Conserved Domains (1) summary
    pfam00046
    Location:115167
    Homeobox; Homeobox domain
  2. NM_066296.5NP_498697.3  Homeobox protein egl-5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498697.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17486
    Conserved Domains (1) summary
    pfam00046
    Location:112164
    Homeobox; Homeobox domain
  3. NM_001025995.3NP_001021166.1  Homeobox protein egl-5 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001021166.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P17486
    Conserved Domains (1) summary
    pfam00046
    Location:116168
    Homeobox; Homeobox domain
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