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cdh-3 Cadherin-3 [ Caenorhabditis elegans ]

Gene ID: 176085, updated on 6-Jul-2021

Summary

Gene symbol
cdh-3
Gene description
Cadherin-3
Primary source
WormBase:WBGene00000395
Locus tag
CELE_ZK112.7
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See cdh-3 in Genome Data Viewer
Location:
chromosome: III
Exon count:
22
Sequence:
Chromosome: III; NC_003281.10 (7741229..7754448, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene B-box type zinc finger protein ncl-1 Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene ncRNA Neighboring gene Putative serine protease pcp-1 Neighboring gene Metaxin-2 homolog

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables structural molecule activity TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
involved_in basement membrane disassembly IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 
involved_in morphogenesis of embryonic epithelium TAS
Traceable Author Statement
more info
PubMed 
involved_in nematode male tail tip morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in basement membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Cadherin-3
NP_498687.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7741229..7754448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066286.6NP_498687.2  Cadherin-3 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34616
    Conserved Domains (3) summary
    cd11304
    Location:637734
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:19752043
    CA; Cadherin repeats
    smart00282
    Location:30823201
    LamG; Laminin G domain
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