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cup-5 hypothetical protein [ Caenorhabditis elegans ]

Gene ID: 176074, updated on 18-Nov-2018

Summary

Gene symbol
cup-5
Gene description
hypothetical protein
Primary source
WormBase:WBGene00000846
Locus tag
CELE_R13A5.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Genomic context

See cup-5 in Genome Data Viewer
Location:
chromosome: III
Exon count:
12
Sequence:
Chromosome: III; NC_003281.10 (7584181..7591328)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Major Facilitator Superfamily Domain containing homolog Neighboring gene hypothetical protein Neighboring gene Serpentine receptor class gamma Neighboring gene Serine/threonine-protein phosphatase Neighboring gene pseudo

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
NAADP-sensitive calcium-release channel activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
calcium channel activity TAS
Traceable Author Statement
more info
PubMed 
cation channel activity IEA
Inferred from Electronic Annotation
more info
 
intracellular ligand-gated ion channel activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
phosphatidylinositol-3,5-bisphosphate binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
Process Evidence Code Pubs
calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
cation transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
determination of adult lifespan IGI
Inferred from Genetic Interaction
more info
PubMed 
ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
lipid transport involved in lipid storage IGI
Inferred from Genetic Interaction
more info
PubMed 
lysosomal transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
lysosome organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
negative regulation of endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of endocytosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasmic vesicle IDA
Inferred from Direct Assay
more info
PubMed 
endolysosome IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
lysosomal membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lysosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
lysosome IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
hypothetical protein
NP_001022719.2
  • Confirmed by transcript evidence
NP_001022721.2
  • Partially confirmed by transcript evidence
NP_001022722.2
  • Confirmed by transcript evidence
NP_001254945.1
  • Confirmed by transcript evidence
NP_498664.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7584181..7591328
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001027550.2NP_001022721.2  Uncharacterized protein CELE_R13A5.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022721.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYK0
    Conserved Domains (1) summary
    pfam08016
    Location:400574
    PKD_channel; Polycystin cation channel
  2. NM_001268016.1NP_001254945.1  Uncharacterized protein CELE_R13A5.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254945.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T666
    Conserved Domains (1) summary
    pfam08016
    Location:382556
    PKD_channel; Polycystin cation channel
  3. NM_001027551.2NP_001022722.2  Uncharacterized protein CELE_R13A5.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022722.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYJ9
    Conserved Domains (1) summary
    pfam08016
    Location:378552
    PKD_channel; Polycystin cation channel
  4. NM_001027548.4NP_001022719.2  Uncharacterized protein CELE_R13A5.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022719.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    D7UU24
    Conserved Domains (1) summary
    pfam08016
    Location:378552
    PKD_channel; Polycystin cation channel
  5. NM_066263.4NP_498664.3  Uncharacterized protein CELE_R13A5.1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498664.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8WSP3
    Conserved Domains (1) summary
    pfam00520
    Location:378565
    Ion_trans; Ion transport protein
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