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zmp-6 ZnMc domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 176025, updated on 10-Aug-2021

Summary

Gene symbol
zmp-6
Gene description
ZnMc domain-containing protein
Primary source
WormBase:WBGene00020646
Locus tag
CELE_T21D11.1
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

See zmp-6 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (7245701..7247840, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Prolyl-tRNA synthetase Neighboring gene C2H2-type domain-containing protein Neighboring gene Major sperm protein Neighboring gene Uncharacterized protein Neighboring gene Phosphatidylserine decarboxylase beta chain Neighboring gene Putative methyltransferase B0361.6

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables metalloendopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables peptidase activity IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in collagen catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
ZnMc domain-containing protein
NP_498599.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7245701..7247840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_066198.7NP_498599.1  ZnMc domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498599.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECC4
    Conserved Domains (1) summary
    cd04278
    Location:48205
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
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